Indulging in a delightful treat that combines the richness of cheesecake with the comforting flavor of chocolate chip muffins is truly a moment to savor. These Cheesecake Chocolate Chip Muffins are both soft and decadent, making them the perfect breakfast or snack to satisfy your sweet tooth. With their creamy center and chocolatey goodness, these muffins will quickly become a favorite in your household. Let’s dive into this scrumptious recipe that’s sure to impress!
Why This Recipe is a Keeper

These Cheesecake Chocolate Chip Muffins stand out for several reasons. First, they offer a delightful contrast between the light, fluffy muffin and the rich, creamy cheesecake filling. Second, they are incredibly easy to make, requiring simple ingredients that are often already in your pantry. Finally, the addition of chocolate chips elevates the flavor profile, making every bite a heavenly experience. Whether you’re enjoying them for breakfast or as a dessert, they’re sure to be a hit!
Ingredients at a Glance
To create these delicious Cheesecake Chocolate Chip Muffins, you will need the following ingredients:
- 8 oz cream cheese, softened
- 1/2 cup granulated sugar
- 1 large egg, room temperature
- 1/2 tsp vanilla extract
- 1/4 cup mini chocolate chips
- 2 cups all-purpose flour, spooned and leveled
- 1/2 cup unsweetened cocoa powder
- 1 tsp baking soda
- 1 tsp salt
- 1/2 cup coconut oil, warmed to a liquid state
- 1 cup granulated sugar
- 1 large egg, room temperature
- 1 cup plain Greek yogurt
- 1/4 cup milk
- 1/4 cup strong coffee, cold
- 1 tsp vanilla extract
- 3/4 cup mini chocolate chips, divided
Essential Tools for Success
Before you start baking, gather these essential tools:
- Muffin tin: A standard 12-cup muffin tin will help shape your muffins perfectly.
- Mixing bowls: Use different sizes for mixing the cream cheese filling and muffin batter.
- Electric mixer: This will make blending the cream cheese filling a breeze.
- Measuring cups and spoons: Accurate measurements are key to perfect muffins.
- Rubber spatula: Great for folding in chocolate chips and ensuring no batter goes to waste.
Cheesecake Chocolate Chip Muffins: Step-by-Step Guide

Creating these muffins is a straightforward process. Follow these steps to ensure perfect results:
Step 1: Prepare the Cream Cheese Filling
In a medium bowl, beat together the softened cream cheese and 1/2 cup granulated sugar using an electric mixer until smooth and creamy. Add 1 egg and 1/2 tsp vanilla extract, mixing until well combined. Gently fold in 1/4 cup mini chocolate chips. Set aside.
Step 2: Preheat and Prepare the Muffin Tin
Preheat your oven to 350°F (175°C). Grease your muffin tin or line it with muffin liners to prevent sticking.
Step 3: Mix Dry Ingredients
In a large bowl, whisk together 2 cups all-purpose flour, 1/2 cup unsweetened cocoa powder, 1 tsp baking soda, and 1 tsp salt. This dry mixture will provide the structure for your muffins.
Step 4: Combine Wet Ingredients
In another bowl, whisk together 1/2 cup melted coconut oil, 1 cup granulated sugar, 1 egg, 1 cup plain Greek yogurt, 1/4 cup milk, 1/4 cup cold strong coffee, and 1 tsp vanilla extract until smooth.
Step 5: Mix Wet and Dry Ingredients
Gradually add the wet mixture to the dry ingredients, stirring until just combined. Be careful not to overmix; a few lumps are okay.
Step 6: Assemble the Muffins
Spoon about 2 tablespoons of muffin batter into each muffin cup. Then, add a generous tablespoon of the cream cheese filling on top of the batter. Finally, cover the cream cheese filling with another tablespoon of muffin batter. Repeat until all muffin cups are filled, leaving a little room for the muffins to rise.
Step 7: Sprinkle with Chocolate Chips
Sprinkle the remaining 1/2 cup of mini chocolate chips on top of each muffin for an extra chocolatey touch.
Step 8: Bake and Cool
Bake in the preheated oven for 18-20 minutes or until a toothpick inserted into the muffin comes out clean (without any wet batter). Allow the muffins to cool in the tin for about 5 minutes before transferring them to a wire rack to cool completely.
Make It Diet-Friendly
If you’re looking to lighten up these Cheesecake Chocolate Chip Muffins, consider the following substitutions:
- Whole wheat flour: Swap out all-purpose flour for whole wheat for added fiber.
- Low-fat cream cheese: Use low-fat cream cheese to reduce calories and fat.
- Greek yogurt alternatives: Use a plant-based yogurt for a dairy-free option.
- Reduce sugar: Cut down the sugar in both the batter and cheesecake filling to your taste.
Common Errors (and Fixes)
Making muffins can sometimes be tricky. Here are some common mistakes to avoid:
- Overmixing the batter: This can lead to dense muffins. Mix until just combined for a light texture.
- Underbaking: If the muffins are too moist in the center, they won’t hold together. Use a toothpick to check for doneness.
- Too much filling: If the cream cheese filling overflows, reduce the amount you add in each muffin.
- Not letting them cool: These muffins taste best when allowed to cool slightly, which helps the flavors meld.
Storage Pro Tips
To keep your Cheesecake Chocolate Chip Muffins fresh and delicious, follow these storage tips:
- At room temperature: Store in an airtight container for up to 3 days.
- In the refrigerator: Keep them in an airtight container for up to a week for optimal freshness.
- Freezing: Freeze muffins in a single layer, then transfer to a freezer bag. They can be stored for up to 3 months. Thaw at room temperature or warm in the microwave before serving.
Helpful Q&A
Can I use other types of chocolate in these muffins?
Absolutely! Feel free to substitute semi-sweet chocolate chips or even white chocolate chips for a different flavor profile. You could also chop up your favorite chocolate bar for a more gourmet touch.
Can I make these muffins ahead of time?
Yes! You can prepare the batter and the cream cheese filling a day in advance. Store them separately in the fridge, and then assemble and bake them the next day for fresh muffins.
What can I serve these muffins with?
These muffins pair wonderfully with a cup of coffee or tea. You can also serve them with a dollop of whipped cream or a scoop of ice cream for a delightful dessert!
How do I know when my muffins are done baking?
The best way to check is to insert a toothpick into the center of a muffin. If it comes out clean or with a few crumbs, they are ready. If it comes out wet, they need more time in the oven.
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That’s a Wrap
There you have it! A simple yet indulgent recipe for Cheesecake Chocolate Chip Muffins that is sure to become a staple in your baking repertoire. With their creamy centers and rich chocolatey goodness, these muffins are perfect for any occasion. Whether you’re hosting a brunch or simply treating yourself, these muffins are a delightful choice. Happy baking!

Cheesecake Chocolate Chip Muffins
Ingredients
For the Cream Cheese Filling:
- 8 oz cream cheese softened
- 1/2 cup granulated sugar
- 1 large egg room temperature
- 1/2 tsp vanilla extract
- 1/4 cup mini chocolate chips
For the Muffins:
- 2 cups all-purpose flour spooned and leveled
- 1/2 cup unsweetened cocoa powder
- 1 tsp baking soda
- 1 tsp salt
- 1/2 cup coconut oil warmed to a liquid state
- 1 cup granulated sugar
- 1 large egg room temperature
- 1 cup plain Greek yogurt
- 1/4 cup milk
- 1/4 cup strong coffee cold
- 1 tsp vanilla extract
- 3/4 cup mini chocolate chips divided
Instructions
Steps:
- In a medium bowl, beat together the softened cream cheese and 1/2 cup granulated sugar using an electric mixer until smooth and creamy. Add 1 egg and 1/2 tsp vanilla extract, mixing until well combined. Gently fold in 1/4 cup mini chocolate chips. Set aside.
- Preheat your oven to 350°F (175°C). Grease your muffin tin or line it with muffin liners to prevent sticking.
- In a large bowl, whisk together 2 cups all-purpose flour, 1/2 cup unsweetened cocoa powder, 1 tsp baking soda, and 1 tsp salt.
- In another bowl, whisk together 1/2 cup melted coconut oil, 1 cup granulated sugar, 1 egg, 1 cup plain Greek yogurt, 1/4 cup milk, 1/4 cup cold strong coffee, and 1 tsp vanilla extract until smooth.
- Gradually add the wet mixture to the dry ingredients, stirring until just combined.
- Spoon about 2 tablespoons of muffin batter into each muffin cup. Then, add a generous tablespoon of the cream cheese filling on top of the batter. Finally, cover the cream cheese filling with another tablespoon of muffin batter.
- Sprinkle the remaining 1/2 cup of mini chocolate chips on top of each muffin.
- Bake in the preheated oven for 18-20 minutes or until a toothpick inserted into the muffin comes out clean. Allow the muffins to cool in the tin for about 5 minutes before transferring them to a wire rack to cool completely.
Equipment
- Muffin Tin
- Mixing bowls
- Electric Mixer
- Measuring cups and spoons
- Rubber spatula
Notes
- For a healthier option, use whole wheat flour instead of all-purpose flour.
- Store muffins in an airtight container at room temperature for up to 3 days.
- These muffins freeze well; wrap individually and store in a freezer bag for up to 3 months.
